PB0186
DATABASE


Click here to access PB0186 phyletic profile

PBID Uniprot Name Gene Alternative Organism Uniprot Description
PB0186 Q14055 Collagen alpha-2(IX) chain COL9A2 DJ39G22.4, EDM2, MED, STL5, collagen type IX alpha 2 chain Homo_sapiens Structural component of hyaline cartilage and vitreous of the eye.

DomainsGene Ontology
PF01391 (9_Collagen)
GO:0005201 (enables) extracellular matrix structural constituent
GO:0005515 (enables) protein binding
GO:0030020 (enables) extracellular matrix structural constituent conferring tensile strength
GO:0001501 (involved in) skeletal system development
GO:0030198 (involved in) extracellular matrix organization
GO:0005615 (is active in) extracellular space
GO:0031012 (is active in) extracellular matrix
GO:0005576 (located in) extracellular region
GO:0005788 (located in) endoplasmic reticulum lumen
GO:0005581 (part of) collagen trimer
GO:0005594 (part of) collagen type IX trimer
GO:0062023 (part of) collagen-containing extracellular matrix

External Links Description
Intact Open source database system and analysis tools for molecular interaction data.
Protein Atlas An open access resource for human proteins
InterPro (new pfam) InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.

Seed proteins (Human and Zebrafish)

Selected proteins from model organisms

Mafft alignment of selected proteins

BMGE Cleaned alignment of selected proteins

PhyML tree of selected proteins

BLAST to find more sequences


Created by Puigbo and Nakamura @ University of Turku (2022)