Click here to access PB0096 phyletic profile

PBID Uniprot Name Gene Alternative Organism Uniprot Description
PB0096 P12109 Collagen alpha-1(VI) chain COL6A1 BTHLM1, OPLL, UCHMD1, collagen type VI alpha 1 chain Homo_sapiens Collagen VI acts as a cell-binding protein.

DomainsGene Ontology
PF00092 (3_VWA)
PF01391 (5_Collagen)
GO:0062023 (colocalizes with) collagen-containing extracellular matrix
GO:0005518 (enables) collagen binding
GO:0030020 (enables) extracellular matrix structural constituent conferring tensile strength
GO:0048407 (enables) platelet-derived growth factor binding
GO:0001649 (involved in) osteoblast differentiation
GO:0007155 (involved in) cell adhesion
GO:0035987 (involved in) endodermal cell differentiation
GO:0071230 (involved in) cellular response to amino acid stimulus
GO:0005615 (is active in) extracellular space
GO:0005576 (located in) extracellular region
GO:0005765 (located in) lysosomal membrane
GO:0005788 (located in) endoplasmic reticulum lumen
GO:0016020 (located in) membrane
GO:0031012 (located in) extracellular matrix
GO:0042383 (located in) sarcolemma
GO:0070062 (located in) extracellular exosome
GO:0005581 (part of) collagen trimer
GO:0005589 (part of) collagen type VI trimer
GO:0032991 (part of) protein-containing complex

External Links Description
Intact Open source database system and analysis tools for molecular interaction data.
Protein Atlas An open access resource for human proteins
InterPro (new pfam) InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.

Seed proteins (Human and Zebrafish)

Selected proteins from model organisms

Mafft alignment of selected proteins

BMGE Cleaned alignment of selected proteins

PhyML tree of selected proteins

BLAST to find more sequences

Created by Puigbo and Nakamura @ University of Turku (2022)