PB0079
DATABASE


Click here to access PB0079 phyletic profile

PBID Uniprot Name Gene Alternative Organism Uniprot Description
PB0079 P25940 Collagen alpha-3(V) chain COL5A3 collagen type V alpha 3 chain Homo_sapiens Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin.

DomainsGene Ontology
PF01391 (2_Collagen)
PF01410 (COLFI)
GO:0005201 (enables) extracellular matrix structural constituent
GO:0005518 (enables) collagen binding
GO:0008201 (enables) heparin binding
GO:0030020 (enables) extracellular matrix structural constituent conferring tensile strength
GO:0043394 (enables) proteoglycan binding
GO:0007160 (involved in) cell-matrix adhesion
GO:0030198 (involved in) extracellular matrix organization
GO:0030199 (involved in) collagen fibril organization
GO:0043588 (involved in) skin development
GO:0005615 (is active in) extracellular space
GO:0031012 (is active in) extracellular matrix
GO:0005576 (located in) extracellular region
GO:0005788 (located in) endoplasmic reticulum lumen
GO:0005581 (part of) collagen trimer
GO:0005588 (part of) collagen type V trimer
GO:0062023 (part of) collagen-containing extracellular matrix

External Links Description
Intact Open source database system and analysis tools for molecular interaction data.
Protein Atlas An open access resource for human proteins
InterPro (new pfam) InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.

Seed proteins (Human and Zebrafish)

Selected proteins from model organisms

Mafft alignment of selected proteins

BMGE Cleaned alignment of selected proteins

PhyML tree of selected proteins

BLAST to find more sequences


Created by Puigbo and Nakamura @ University of Turku (2022)